Em construção

Ensino

Data


Enviroment

How to

manual will soon be available

basic purposes

  java -Xms2G -Xmx4G -jar GenomeFinisher.jar  \
    -i target_contigs.fasta  \
    -ds alternative_assemblies.fasta -ref reference.fasta  \
    -o outputDirectory

Generate the template configuration file

  java -jar GenomeFinisher.jar -config -create config.txt

running with the configuration file

  java -Xms2G -Xmx4G -jar GenomeFinisher.jar \
    -i target_contigs.fasta -ds alternative_assemblies.fasta -ref reference.fasta \
    -o outputDirectory -config config.txt

To extend the reports

  java -Xms2G -Xmx4G -jar GenomeFinisher.jar -i target_contigs.fasta  \
    -ds alternative_assemblies.fasta -ref reference.fasta -o outputDirectory  \
    -v 3

Default language

  java -Xms2g -Xmx4g -Duser.language=en -jar GenomeFinisher.jar